43. - Larosa, V., Coosemans, N., Motte, P., Bonnefoy, N., Remacle, C. (2012) Reconstruction of a human mitochondrial complex I mutation in the unicellular green alga Chlamydomonas. Plant J, Epub ahead of print.

42. - Glatigny, A., Mathieu, L., Herbert, CJ., Dujardin, G., Meunier, B., Mucchielli-Giorgi, MH. (2011) An in silico approach combined with in vivo experiments enables the identification of a new protein whose overexpression can compensate for specific respiratory defects in Saccharomyces cerevisiae. BMC Syst Biol, 5 (1) 173.

41. - Kurischko, C., Kuravi, VK., Herbert, CJ., Luca, FC.(2011)Nucleocytoplasmic shuttling of Ssd1 defines the destiny of its bound mRNAs. Mol Microbiol, 81 (3) 831-49.

40. Kühl, I., Dujeancourt, L., Gaisne, M., Herbert, C.J., Bonnefoy, N. (2011) A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression.Nucleic Acids Res, 39 (18) 8029-41.

39. Nowak, J. K., Gromadka, R., Juszczuk, M., Jerka-Dziadosz, M., Maliszewska, K., Mucchielli, M. H., Gout, J. F., Arnaiz, O., Agier, N., Tang, T., Aggerbeck, L. P., Cohen, J., Delacroix, H., Sperling, L., Herbert, C. J., Zagulski, M., Betermier, M. (2011) A functional study of genes essential for autogamy and nuclear reorganization in Paramecium. Eukaryot Cell, 10 (3) 363-72.

38. Panozzo, C., Bourens, M., Nowacka, A. and Herbert, C.-J. (2010) Mutations in the C-terminus of the conserved NDR kinase, Cbk1p of Saccharomyces cerevisiae, make the protein independent of upstream activators. Mol Genet Genomics, 283 (2) 111-22.

37. Bonnefoy, N., Fiumera, H.-L., Dujardin, G. and Fox, T.-D. (2009) Roles of Oxa1-related inner-membrane translocases in assembly of respiratory chain complexes. Review. Biochim Biophys Acta, 1793 (1) 60-70.

36. Dukanovic, J., Dimmer, K. S., Bonnefoy, N., Krumpe, K. and Rapaport, D. (2009) Genetic and functional interactions between Tom6 and Sam37 of the mitochondrial outer membrane. Mol Cell Biol, 29 (22) 5975-88.

35. Herbert, C. J. (2009) In memoriam: Piotr Slonimski (9 November 1922-25 April 2009). Yeast, 26 (10) 575-577.

34. Bourens, M., Panozzo, C., Nowacka, A., Imbeaud, S., Mucchielli, M.-H. and Herbert, C.-J. (2009) Mutations in the Saccharomyces cerevisiae Kinase Cbk1p, Lead to a Fertility Defect That Can Be Suppressed by the Absence of Brr1p or Mpt5p (Puf5p), Proteins Involved in RNA Metabolism. Genetics, 183 (1) 161-73.

33. Bourges, I., Mucchielli, M.-H., Herbert, C.-J., Guiard, B., Dujardin, G. and Meunier, B. (2009) Multiple Defects in the Respiratory Chain Lead to the Repression of Genes Encoding Components of the Respiratory Chain and TCA Cycle Enzymes. J Mol Biol, 23 (1) 23-42.

32. Bonnefoy N., Fiumera H.L., Dujardin G. and Fox T.D. Roles of Oxa1-related inner membrane translocases in assembly of respiratory chain complexes. In Biochimica Biophysica Acta - Molecular Cell Research : Assembly of the mitochondrial respiratory chain, Winge D. and Tzagloff A. (eds), Elsevier, (2009) 1793:60-70.

31. Bourens, M., Racki, W., Bécam, A.-M., Panozzo, C., Boulon, S., Bertrand, E. and Herbert, C. J. (2008) Mutations in a small region of the exportin Crm1p disrupt the daughter cell specific nuclear localization of the transcription factor Ace2p in Saccharomyces cerevisiae. Biol Cell, 100 (6) 343-54.

30. Rorbach, J., Richter, R., Wessels, H.-J., Wydro, M., Pekalski, M., Farhoud, M., Kühl, I., Gaisne, M., Bonnefoy, N., Smeitink, J.-A., Lightowlers, R.-N. and Chrzanowska-Lightowlers, Z.-M. (2008) The human mitochondrial ribosome recycling factor is essential for cell viability. Nucleic Acids Res, 36 (18) 5787-99.

29. Soleimanpour-Lichaei, H.-R., Kühl, I., Gaisne, M., Passos, J.-F., Wydro, M., Rorbach, J., Temperley, R., Bonnefoy, N., Tate, W., Lightowlers, R. and Chrzanowska-Lightowlers, Z. (2007) mtRF1a Is a Human Mitochondrial Translation Release Factor Decoding the Major Termination Codons UAA and UAG. Mol Cell, 27 (5) 745-57.

28. Bonnefoy, N., Remacle, C. and Fox, T. D. (2007) Genetic transformation of Saccharomyces cerevisiae and Chlamydomonas reinhardtii mitochondria. in Methods in Cell Biology: Mitochondria 80, 525-547, L. A. Pon and E. E. Schon (Ed.), Academic Press.

27. Wiesenberger, G., Speer, F., Haller, G., Bonnefoy, N., Schleiffer, A. and Schäfer, B. (2007) RNA degradation in fission yeast mitochondria is stimulated by a member of a new family of proteins that are conserved in lower eucaryotes. Journal of Molecular Biology, 367 (3) 681-91.

26. Bonnefoy, N. and Fox, T. D. (2007) Directed alteration of Saccharomyces cerevisiae mitochondrial DNA by biolistic transformation and homologous recombination. in Methods in Mol Biol: Mitochondria 372, 153-166, D. Leister and J. M. Herrmann (Ed.), Humana Press Inc, Totowa, NJ.

25. Chiron, S., Gaisne, M., Guillou, E., Belenguer, P., Clark-Walker, G. D. and Bonnefoy, N. (2007) Studying mitochondria in an attractive model: Schizosaccharomyces pombe. in Methods in Mol Biol: Mitochondria 372, 91-106, D. Leister and J. Herrmann (Ed.), Humana Press Inc, Totowa, NJ.

24. Williams, E. H., Butler, C. A., Bonnefoy, N. and Fox, T. D. (2007) Translation initiation in Saccharomyces cerevisiae mitochondria: Functional interactions among mitochondrial ribosomal protein Rsm28p, initiation factor 2, methionyl-tRNA-formyltransferase, and novel protein Rmd9p Genetics 175 (3) 1117-26.

23. Gaisne, M. and Bonnefoy, N. (2006) The COX18 gene, involved in mitochondrial biogenesis, is functionally conserved and tightly regulated in humans and fission yeast. FEMS Yeast Research 6(6) 869-82.

22. Duvezin-Caubet, S., Rak, M., Lefebvre-Legendre, L., Tetaud, E., Bonnefoy, N. and di Rago, J.-P. (2006) A ‘petite-obligate’ mutant of Saccharomyces cerevisiae : functional mtDNA is lethal in cells lacking the delta subunit of mitochondrial F1-ATPaseJ. J Biol Chem, 281 (24) 16305-13.

21. Ott, M., Prestele, M., Bauerschmitt, H., Funes, S., Bonnefoy, N. and Herrmann, J. M. (2006) Mba1, a membrane-associated ribosome receptor in mitochondria. EMBO J, 25 (8) 1603-10.

20. Remacle, C., Cardol, P., Coosemans, N., Gaisne, M. and Bonnefoy, N. (2006) High-efficiency biolistic transformation of Chlamydomonas mitochondria can be used to insert mutations in complex I genes. Proc Natl Acad Sci, 103 (12) 4771-6.

19. Chiron, S., Suleau, A. and Bonnefoy, N. (2005) Mitochondrial translation: elongation factor tu is essential in fission yeast and depends on an exchange factor conserved in humans but not in budding yeast. Genetics, 169 (4) 1891-901.

18. Williams, E. H., Bsat, N., Bonnefoy, N., Butler, C. and Fox, T. D. (2005) Alteration of a novel dispensable mitochondrial ribosomal small-subunit protein, Rsm28p, allows translation of defective COX2 mRNAs. Eukaryot Cell, 4 (2) 337-45.

17. Lemaire, C., Guibet-Granmougin, F., Angles, D., Dujardin, G. and Bonnefoy, N. (2004) A yeast mitochondrial membrane methyltransferase-like protein can compensate for oxa1 mutations. J Biol Chem, 279 (46) 47464-72.

16. Herrmann, J. and Bonnefoy, N. (2004) Protein export across the inner membrane of mitochondria: the nature of translocated domains determines the dependence on the Oxa1 translocase. J Biol Chem, 279 (4) 2507-12.

15. Zagulski, M., Kressler, D., Bécam, A.-M., Rytka, J. and Herbert, C. (2003) Mak5p, which is required for the maintenance of the M1 dsRNA virus, is encoded by the yeast ORF YBR142w and involved in the biogenesis of the 60S subunit of the ribosome. Mol Genet Genomics, 270 (3) 216-24.

14. Rickman, D. S., Herbert, C. J. and Aggerbeck, L. P. (2003) Optimizing spotting solutions for increased reproducibility of cDNA microarrays. Nucleic Acids Res, 31 (18) e109.

13. Patent : « Procédé de production industrielle d'ARN et système utile pour ladite production », di Rago J.-P.(40%), Bonnefoy N. (40%), Duvezin-Caubet S. (20%), inventors. Deposited on July 23d 2003, as # 0309024, CNRS & Université Bordeaux2. International extension pending.

12. Szyrach, G., Ott, M., Bonnefoy, N., Neupert, W. and Herrmann, J. (2003) Ribosome binding to the Oxa1 complex facilitates co-translational protein insertion in mitochondria. EMBO J, 22 (24) 6448-57.

11. Golik, P., Bonnefoy, N., Szczepanek, T., Saint-Georges, Y. and Lazowska, J. (2003) The Rieske FeS proteine encoded and synthesized within mitochondria complements a deficiency in the nuclear gene. Proc Natl Acad Sci USA, 100 (15) 8844-9.

10. Saint-Georges, Y., Bonnefoy, N., Di Rago, J., Chiron, S. and Dujardin, G. (2002) A pathogenic cytochrome b mutation reveals new interactions between subunits of the mitochondrial bc1 complex. J Biol Chem, 277 (49397-49402).

9. Panozzo, C., Nawara, M., Suski, C., Kucharczyka, R., Skoneczny, M., Bécam, A., Rytka, J. and Herbert, C. (2002) Aerobic and anaerobic NAD⁺ metabolism in Saccharomyces cerevisiae. FEBS Lett, 517 (97-102)

8. Rouillard, J., Herbert, C. and Zuker, M. (2002) OligoArray: genome-scale oligonucleotide design for microarrays. Bioinformatics, 18 486-7.

7. Bonnefoy, N. and Fox, T. D. (2001) Genetic transformation of Saccharomyces cerevisiae mitochondria. Methods in Cell Biology: Mitochondria 65, L. A. Pon and E. E. Schon (Ed.).

6. Bonnefoy, N., Bsat, N. and Fox, T. D. (2001) Mitochondrial translation of Saccharomyces cerevisiae COX2 mRNA is controlled by the nucleotide sequence specifying the pre-Cox2p leader peptide. Mol Cell Biol, 21 2359-2372.

5. Becam, A., Nasr, F., Racki, W., Zagulski, M. and Herbert, C. (2001) Ria1p (Ynl163c), a protein similar to elongation factor 2, is involved in the biogenesis of the 60S subunit of the ribosome in Saccharomyces cerevisiae. Mol Genet Genomics, 266 454-462.

4. Bonnefoy, N., Kermorgant, M., Groudinsky, O. and Dujardin, G. (2000) The respiratory gene OXA1 has two fission yeast orthologues which together encode a function essential for cellular viability. Mol Microbiol, 35 1135-1145.

3. Racki WJ, Bécam AM, Nasr F, Herbert CJ. Cbk1p, a protein similar to the human myotonic dystrophy kinase, is essential for normal morphogenesis in Saccharomyces cerevisiae. EMBO J. 2000 19:4524-4532.

2. Costanzo, M. C., Bonnefoy, N., Williams, E. H., Clark-Walker, G. D. and Fox, T. D. (2000) Highly diverged homologs of Saccharomyces cerevisiae mitochondrial mRNA specific translational activtors have orthologous functions in other budding yeast. Genetics, 154 999-1012.

1. Bonnefoy, N. and Fox, T. F. (2000) In vivo analysis of mutatedinitiation codons in the mitochondrial COX2 gene of Saccharomyces cerevisiae fused to the reporter gene ARG8ùm reveals lack of downstream reinitiation. Mol Gen Genet, 232 1036-1046.

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