- Aigrain, L., Pompon, D., Moréra, S. and Truan, G. (2009) Structure of the open conformation of a functional chimeric NADPH cytochrome P450 reductase. EMBO Rep, 10 (7) 742-7.

- Aigrain, L., Pompon, D., Truan, G. and Moréra, S. (2009) Cloning, purification, crystallization and preliminary X-ray analysis of a chimeric NADPH-cytochrome P450 reductase. Acta Crystallogr Sect F Struct Biol Cryst Commun, 65 (Pt3) 210-2.

- Arnaiz, O., Malinowska, A., Klotz, C., Sperling, L., Dadlez, M., Koll, F. & Cohen J. (2009) Cildb: a knowledgebase for centrosomes and cilia. Database, doi:10.1093/database/bap022.

- Audit, B., Zaghloul, L., Vaillant, C., Chevereau, G., d'Aubenton-Carafa, Y., Thermes, C. and Arneodo, A. (2009) Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells. Nucleic Acids Res, 37 (18) 6064-75.

- Baker, M. J., Webb, C. T., Stroud, D. A., Palmer, C. S., Frazier, A. E., Guiard, B., Chacinska, A., Gulbis, J. M. and Ryan, M. T. (2009) Structural and functional requirements for activity of the Tim9-Tim10 complex in mitochondrial protein import. Mol Biol Cell, 20 (3) 769-79.

- Baudry, C., Malinsky, S., Restituito, M., Kapusta, A., Rosa, S., Meyer, E. and Bétermier, M. (2009) PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia. Genes Dev, 23 (21) 2478-83.

- Ben Amor, B., Wirth, S., Merchan, F., Laporte, P., d'Aubenton-Carafa, Y., Hirsch, J., Maizel, A., Mallory, A., Lucas, A., Deragon, J.-M., Vaucheret, H., Thermes, C. and Crespi, M. (2009) Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res, 19 (1) 57-69.

- Berretta, J. (2009) Thèse. Identification et caractérisation fonctionnelle d'un ARN non codant impliqué dans la régulation du rétrotransposon Ty1 chez Saccaromyces cerevisiae. Université Paris-Sud 11. Soutenue le 2 octobre 2009, sous la direction d'Antonin Morillon.

- Berretta, J. and Morillon, A. (2009) Pervasive transcription a novel regulatory level in eukaryotes? EMBO Rep, 10 (9) 973-82.

- Bonné, L. (2009) Thèse. Etude de la translocase à ADN FtsK et de ses interactions avec les recombinases XerCD chez Escherichia coli. Université Paris-Sud 11. Soutenue le 17 décembre 2009, sous la direction de François-Xavier Barre.

- Bonné, L., Bigot, S., Chevalier, F., Allemand, J.-F. and Barre, F.-X. (2009) Asymmetric DNA requirements in Xer recombination activation by FtsK. Nucleic Acids Res, 37 (7) 2371-80.

- Bonnefoy, N., Fiumera, H.-L., Dujardin, G. and Fox, T.-D. (2009) Roles of Oxa1-related inner-membrane translocases in assembly of respiratory chain complexes. Review. Biochim Biophys Acta, 1793 (1) 60-70.

- Bourens, M., Panozzo, C., Nowacka, A., Imbeaud, S., Mucchielli, M.-H. and Herbert, C.-J. (2009) Mutations in the Saccharomyces cerevisiae Kinase Cbk1p, Lead to a Fertility Defect That Can Be Suppressed by the Absence of Brr1p or Mpt5p (Puf5p), Proteins Involved in RNA Metabolism. Genetics, 183 (1) 161-73.

- Bourges, I., Mucchielli, M.-H., Herbert, C.-J., Guiard, B., Dujardin, G. and Meunier, B. (2009) Multiple Defects in the Respiratory Chain Lead to the Repression of Genes Encoding Components of the Respiratory Chain and TCA Cycle Enzymes. J Mol Biol, 23 (1) 23-42.

- Brooks, M.-A., Dziembowski, A., Quevillon-Cheruel, S., Henriot, V., Faux, C., van Tilbeurgh, H. and Séraphin, B. (2009) Structure of the yeast Pml1 splicing factor and its integration into the RES complex. Nucleic Acids Res, 37 (1) 129-43.

- Buchon, N., Broderick, N., Poidevin, M., Pradervand, S. and Lemaitre, B. (2009) Drosophila intestinal response to bacterial infection: activation of host defense and stem cell proliferation. Cell Host Microbe, 5 (2) 200-11.

- Buchon, N., Poidevin, M., Kwon, H.-M., Guillou, A., Sottas, V., Lee, B.-L. and Lemaitre, B. (2009) A single modular serine protease integrates signals from pattern-recognition receptors upstream of the Drosophila Toll pathway. Proc Natl Acad Sci U S A, 106 (30) 12442-7.

- Bury-Moné, S., Nomane, Y., Reymond, N., Barbet, R., Jacquet, R., Imbeaud, S., Jacq, A. and Bouloc, P. (2009) Global analysis of extracytoplasmic stress signaling in Escherichia coli. PLoS Genetics, 5 (9) e1000651.

- Chan, W. K., Bhalla, A. D., Le Hir, H., Nguyen, L. S., Huang, L., Gécz, J. and Wilkinson, M. F. (2009) A UPF3-mediated regulatory switch that maintains RNA surveillance. Nat Struct Mol Biol, 16 747-753.

- Chevereau, G., Palmeira, L., Thermes, C., Arneodo, A. and Vaillant, C. (2009) Thermodynamics of nucleosome ordering by genomic confinement. Phys Rev Letters, 103 (18) 188103.

- Culetto, E. and Legouis, R. (2009) Des vésicules à RISC pour les microARN. Biofutur, 304 50-54.

- Daniel, J. (2009) A fitness-based interferential genetics approach using hypertoxic/inactive gene alleles as references. Mol Genet Genomics, 281 437-445.

- Defaye, D., Evans, I., Crozatier, M., Wood, W., Lemaitre, B. and Leulier, F. (2009) Genetic Ablation of Drosophila Phagocytes Reveals Their Contribution to Both Development and Resistance to Bacterial Infection. J Innate Immun, 1 322-334.

- Dukanovic, J., Dimmer, K. S., Bonnefoy, N., Krumpe, K. and Rapaport, D. (2009) Genetic and functional interactions between Tom6 and Sam37 of the mitochondrial outer membrane. Mol Cell Biol, 29 (22) 5975-88.

- Duncan, A., Bitner-Glindzicz, M., Meunier, B., Costello, H., Hargreaves, I., Lopez, L., Hirano, M., Sadowski, M. I., Hardy, J., Singleton, A., Clayton, P. and Rahman, S. (2009) A nonsense mutation in COQ9 causes autosomal recessive neonatal onset primary coenzyme Q10 deficiency – a potentially treatable form of mitochondrial disease. Am J Hum Genet 84 (5) 558-66.

- Duval, A., Laisné, A., Pompon, D., Held, S., Bellemain, A., Moreau, J. and Canva, M. (2009) Polarimetric surface plasmon resonance imaging biosensor. Opt Lett, 34 (23) 3634-6.

- El Khoury, R. (2009) Thèse. Effets de mutations de la translocase ATP/ADP mitochondriale sur la stabilité de l'ADN mitochondrial et la longévité chez le champignon filamenteux Podospora anserina. Université Paris-Sud 11. Soutenue le 21 septembre 2009, sous la direction de Annie Sainsard-Chanet.

- El-Khoury, R. and Sainsard-Chanet, A. (2009) Suppression of Mitochondrial DNA Instability of Autosomal Dominant Forms of Progressive External Ophthalmoplegia-Associated ANT1 Mutations in Podospora anserina. Genetics, 183 (3) 861-71.

- Espéli, O. (2009) HDR. Dynamique des chromosomes bactériens. Université Paris-Sud 11. Soutenue le 29 juin 2009.

- Gendrin, M., Welchman, DP., Poidevin, M., Hervé, M., Lemaitre, B. (2009) Long-range activation of systemic immunity through peptidoglycan diffusion in Drosophila. PLoS Pathog, 5 (12) e1000694.

- Figueroa-Bossi, N., Valentini, M., Malleret, L., Fiorini, F., Bossi, L. (2010) Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev,  23 (17) 2004-15. Erratum in: Genes Dev. 2010 Apr 1; 24 (7) 734.

- Geuking, P., Narasimamurthy, R., Lemaitre, B., Basler, K. and Leulier, F. (2009) A non-redundant role for Drosophila Mkk4 and hemipterous/Mkk7 in TAK1-mediated activation of JNK. PLoS One, 4 (11) e7709.

- Glatigny, A., Delacroix, H., Tang, T., François, N., Aggerbeck, L. and Mucchielli-Giorgi, M.-H. (2009) Characterisation and correction of signal fluctuations in successive acquisitions of microarray images. BMC Bioinformatics, 10 (1) 98.

- Gudipati, R. (2009) Thèse. Transcription termination and RNA degradation in the yeast Saccharomyces cerevisiae. Université Paris-Sud 11. Soutenue le 1er octobre 2009, sous la direction de Domenico Libri.

- Guérin, A., d'Aubenton-Carafa, Y., Marrakchi, E., Da Silva, C., Wincker, P., Mazan, S. and Rétaux, S. (2009) Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates. PLoS ONE, 4 (4) e5374.

- Herbert, C. J. (2009) In memoriam: Piotr Slonimski (9 November 1922-25 April 2009). Yeast, 26 (10) 575-577.

- Hui, J.-H., Raible, F., Korchagina, N., Dray, N., Samain, S., Magdelenat, G., Jubin, C., Segurens, B., Balavoine, G., Arendt, D. and Ferrier, D.-E. (2009) Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes. BMC Biol, 7 43.

- Jezequel, L. (2009) Thèse. Développement d'approches prédictives pour l'ingénierie des protéines par évolution dirigée et application au dévelopemment d'une thérapie anticancéreuse. Université Paris-Sud 11. Soutenue le 9 octobre 2009, sous la direction de Denis Pompon et Jacqueline Loeper.

- Kastelic, D. (2009) Thèse. Identification de marqueurs et développement de puces à protéines pour la caractérisation du protéome et la classification des tissus cancéreux. Université Paris-Sud 11 & University of Ljubljanna, Slovénie. Soutenue le 9 décembre 2009, sous la direction de Denis Pompon et de Radovan Komel.

- Kastelic, D., Frković-Grazio, S., Baty, D.,Truan, G., Komel, R. and Pompon, D. (2009) A single-step procedure for the selection of efficiently produced llama VH binders directed against cancer markers. J Immun Methods 350 (1-2) 54-62.

- Kerner, P. (2009) Thèse. Etude de l'évolution du système nerveux chez les animaux : neurogenèse comparative et phylogénomique. Université Paris-Sud 11. Soutenue le 13 février 2009, sous la direction de Michel Vervoort.

- Kerner, P., Hung, J., Behague, J., Le Gouar, M., Balavoine, G. and Vervoort, M. (2009) Insights into the evolution of the snail superfamily from metazoan wide molecular phylogenies and expression data in annelids. BMC Evol Biol, 9 (1) 94.

- Kerner, P., Ikmi, A., Coen, D. and Vervoort, M. (2009) Evolutionary history of the iroquois/Irx genes in metazoans. BMC Evol Biol, 9 (74).

- Kerner, P., Simionato, E., Le Gouar, M. and Vervoort, M. (2009) Orthologs of key vertebrate neural genes are expressed during neurogenesis in the annelid Platynereis dumerilii. Evol Dev, 11 (5) 513-24.

- Latrèche, L. (2009) Thèse. Synthèse et régulation des sélénoprotéines humaines. Université Pierre et Marie Curie. Soutenue le 16 octobre 2009, sous la direction de Laurent Chavatte.

- Latrèche, L., Jean-Jean, O., Driscoll, D. and Chavatte, L. (2009) Novel structural determinants in human SECIS elements modulate the translational recoding of UGA as selenocysteine. Nucleic Acids Res, 12 (5) 408-16.

- Lelandais, G., Saint-Georges, Y., Geneix, C., Al-Shikhley, L., Dujardin, G. and Jacq, C. (2009) Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules. PLoS Comput Biol, 5 (6) e1000409.

- Lepagnol-Bestel, A., Zvara, A., Maussion, G., Quignon, F., Ngimbous, B., Ramoz, N., Imbeaud, S., Loe-Mie, Y., Benihoud, K., Agier, N., Salin, P., Cardona, A., Khung-Savatovsky, S., Kallunki, P., Delabar, J., Puskas, L., Delacroix, H., Aggerbeck, L., Delezoide, A., Delattre, O., Gorwood, P., Moalic, J. and Simonneau, M. (2009) DYRK1A interacts with the REST/NRSF-SWI/SNF chromatin remodelling complex to deregulate gene clusters involved in the neuronal phenotypic traits of Down syndrome. Hum Mol Genet, 18 (8) 1405-14.

- Leulier, F. (2009) HDR. Rupture de tolérance immunitaire innée : mécanismes et conséquences chez un organisme modèle invertébré. Université Paris-Sud 11. Soutenue le 12 juin 2009.

- Leulier, F. and Royet, J. (2009) Maintaining immune homeostasis in fly gut. Nature Immunol, 10 (9) 936 - 938.

- Lhocine, N. (2009) Thèse. Analyse de nouveaux régulateurs de la voie de transduction du signal IMD chez Drosophila melanogaster. Université Paris Diderot (Paris 7). Soutenue le 30 septembre 2009, sous la direction de François Leulier.

- Maas, M. F., Krause, F., Dencher, N. A. and Sainsard-Chanet, A. (2009) Respiratory Complexes III and IV Are Not Essential for the Assembly/Stability of Complex I in Fungi. J Mol Biol, 387 (2) 259-69.

- Mathieu, L. (2009) Thèse. La biogénèse des complexes respiratoires mitochondriaux chez la levure Saccharomyces cerevisiae. Université de Versailles - Saint-Quentin-en-Yvelines. Soutenue le 11 décembre 2009, sous la direction de Geneviève Dujardin.

- Mauxion, F., Chen, C.-Y., Séraphin, B. and Shyu, A.-B. (2009) BTG/TOB factors impact deadenylases. Trends Biochem Sci, 34 (12) 640-7.

- Mercier, R. (2009) Thèse. Organisation du chromosome bactérien en macrodomaines : identification du système matS / MATP. Université Paris-Sud 11. Soutenue le 28 septembre 2009, sous la direction de Frédéric Boccard et Olivier Espéli.

- Mercier, R., Espeli, O. and Boccard, F. (2009) L'organisation à grande échelle du chromosome bactérien. Med Sci, 25 (11) 885-887.

- Meunier, B. (2009) HDR. Function and dysfunction of respiratory chain complexes. The cellular response to respiratory dysfunction and remodelling the yeast bc1 complex to study pathogen and human enzymes. Université Paris-Sud 11. Soutenue le 6 octobre 2009.

- Michel, F., Costa, M. and Westhof, E. (2009) The ribozyme core of group II introns: a structure in want of partners. Trends Biochem Sci, 34 (4) 189-99.

- Michelet, X. (2009) Thèse. Analyse cellulaire et développementale de la machinerie ESCRT chez le nématode Caenorhabditis elegans. Université Paris-Sud 11. Soutenue le 5 novembre 2009, sous la direction de Renaud Legouis.

- Michelet, X., Alberti, A., Benkemoun, L., Roudier, N., Lefebvre, C. and Legouis, R. (2009) The ESCRT-III protein CeVPS-32 is enriched in domains distinct from CeVPS-27 and CeVPS-23 at the endosomal membrane of epithelial cells. Biol Cell, 101 (10) 599-615.

- Narjoz, C., Marisa, L., Imbeaud, S., Paris, A., Delacroix, H., Beaune, P. and De Waziers, I. (2009) Genomic consequences of cytochrome P450 2C9 overexpression in human hepatoma cells. Chem Res Toxicol, 22 (5) 779-87.

- Neil, H., Malabat, C., d'Aubenton-Carafa, Y., Xu, Z., Steinmetz, L. M. and Jacquier, A. (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature, 457 (7232) 1038-42.

- Nielsen, K. H., Chamieh, H., Andersen, C. B., Fredslund, F., Hamborg, K., Le Hir, H. and Andersen, G. R. (2009) Mechanism of ATP turnover inhibition in the EJC. RNA, 15 (1) 67-75.

- Nouet, C., Truan, G., Mathieu, L. and Dujardin, G. (2009) Functional Analysis of Yeast bcs1 Mutants Highlights the Role of Bcs1p-Specific Amino Acids in the AAA Domain. J Mol Biol, 388 (2) 252-61.

- Petit, E., Michelet, X., Rauch, C., Bertrand-Michel, J., Terce, F., Legouis, R. and Morel, F. (2009) Glutathione transferases kappa 1 and kappa 2 localize in peroxisomes and mitochondria, respectively, and are involved in lipid metabolism and respiration in Caenorhabditis elegans. FEBS J, 276 (18) 5030-40 *Corresponding author.

- Pilipiuk, J., Lefebvre, C., Wiesenfahrt, T., Legouis, R. and Bossinger, O. (2009) Increased IP(3)/Ca(2+) signaling compensates depletion of LET-413/DLG-1 in C. elegans epithelial junction assembly. Dev Biol, 327 (1) 34-47.

- Pinskaya, M., Gourvennec, S. and Morillon, A. (2009) H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation. EMBO J, 28 (12) 1697-707.

- Pinskaya, M. and Morillon, A. (2009) H3K4 di methylation: a novel mark for transcriptional fidelity? Epigenetics 4(5) 302-6.

- Pinskaya, M., Nair, A., Clynes, D., Morillon, A. and Mellor, J. (2009) Nucleosome remodeling and transcriptional repression are distinct functions of Isw1 in Saccharomyces cerevisiae. Mol Cell Biol, 29 (9) 2419-30.

- Quevillon-Cheruel, S., Leulliot, N., Muniz, C., Vincent, M., Gallay, J., Argentini, M., Cornu, D., Boccard, F., Lemaitre, B. and van Tilbeurgh, H. (2009) Evf, a Virulence Factor Produced by the Drosophila Pathogen Erwinia carotovora, Is an S-Palmitoylated Protein with a New Fold That Binds to Lipid Vesicles. J Biol Chem, 284 (6) 3552-3562.

- Sehring, I. M., Klotz, C., Beisson, J. and Plattner, H. (2009) Rapid downregulation of the Ca2+-signal after exocytosis stimulation in Paramecium cells: essential role of a centrin-rich filamentous cortical network, the infraciliary lattice. Cell Calcium, 45 (1) 89-97.

- Sellem, C., Bovier, E., Lorin, S. and Sainsard-Chanet, A. (2009) Mutations in Two Zinc Cluster Proteins Activate Alternative Respiratory and Gluconeogenic Pathways and Restore Senescence in Long-lived Respiratory Mutants of Podospora anserina. Genetics, 182 (1) 69-78.

- Tang, T. (2009) Thèse. Quantification des signaux fluorescents dans le images de biopuces. Université Pierre et Marie Curie (Paris 6). Soutenue le 29 juin 2009, sous la direction de Hervé Delacroix.

- Tricoire, H., Battisti, V., Trannoy, S., Lasbleiz, C., Pret, A.-M. and Monnier, V. (2009) The steroid hormone receptor EcR finely modulates Drosophila lifespan during adulthood in a sex-specific manner. Mech Ageing Dev, 130 (8) 547-552.

- Vernis, L., Facca, C., Delagoutte, E., Soler, N., Chanet, R., Guiard, B., Faye, G. and Baldacci, G. (2009) A newly identified essential complex, Dre2-Tah18, controls mitochondria integrity and cell death after oxidative stress in yeast. PLoS ONE, 4 (2) e4376.

- Wodak, S.-J., Pu, S., Vlasblom, J. and Séraphin, B. (2009) Challenges and rewards of interaction proteomics. Mol Cell Proteomics, 8 (1) 3-18.