CGM - Centre de Génétique Moléculaire
Les publications des chercheurs du CGM : 2007
MàJ : 12/09/08
Publications 2007 : 78 références
- Acosta Muniz, C., Jaillard, D., Lemaitre, B. and Boccard, F. (2007) Erwinia carotovora Evf antagonizes the elimination of bacteria in the gut of Drosophila larvae. Cell Microbiol, 9 (1) 106-19.
- Agnès, F. (2007) Franchir ou ne pas franchir, mourir ou survivre : les choix des neurones et des cellules polaires. HDR, Université Paris-Sud 11
- Arnaiz, O., Cain, S., Cohen, J. and Sperling, L. (2007) ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. Nucleic Acids Res 35 (Database issue) D439-44.
- Arneodo, A., Audit, B., Brodie of Brodie, E.-B., Nicolay, S., St Jean, P., d'Aubenton-Carafa, Y., Thermes, C. and Touchon, M. (2007) DNA in Chromatin: from genome-wide sequence analysis to the modeling of replication in mammals. in Special Volume in Memory of Ilya Prigogine: Advances in Chemical Physics 135, S.-A. Rice (Ed.), John Wiley & Sons,
- Arneodo, A., d'Aubenton Carafa, Y., Audit, B., Brodie of Brodie, E. B., Nicolay, S., Saint-Jean, P., Thermes, C., Touchon, M. and Vaillant, C. (2007) DNA in chromatin: from genome wide sequence analysis to the modeling of replication in mammals Adv Chem Phys, 135 203-252.
- Arneodo, A., Vaillant, C., Audit, B., d'Aubenton Carafa, Y. and Thermes, C. (2007) What Can We Learn from the Analysis of Scale Invariance and Long-range Correlation Properties of DNA Sequences Using Wavelet Techniques? in Modern Mathematical Models, Methods and Algorithms for Real World Systems sous presse, A.-H. Siddiqi, I.-S. Duff and O. Christensen (Ed.), Anamaya, New Delhi.
- Audit, B., Nicolay, S., Huvet, M., Touchon, M., d'Aubenton-Carafa, Y., Thermes, C. and Arneodo, A. (2007) DNA replication timing data corroborate in silico human replication origin predictions. Physical Review Letters, 99 (24) 248102.
- Baguet, A., Degot, S., Cougot, N., Bertrand, E., Chenard, M.-P., Wendling, C., Kessler, P., Le Hir, H., Rio, M.-C. and Tomasetto, C. (2007) The exon-junction-complex-component metastatic lymph node 51 functions in stress-granule assembly. J Cell Sci, 120 (pt16) 2774-84.
- Balavoine, G. (2007) Un retournement de situation à l'origine des vertébrés. Médecine/Sciences, 23 (11) 1027-1028.
- Balvay, L., Lopez Lastra, M., Sargueil, B., Darlix, J. and Ohlmann, T. (2007) Translational control of retroviruses. Nature Reviews Microbiology 5(2) 128-140.
- Barre, F.-X. (2007) FtsK and SpoIIIE: the tale of the conserved tails. Mol Microbiol, 66 (6) 1051-1055.
- Beisson, J. (2007) Preformed cell structure and cell heredity. in Protein based inheritance In press, Y. Chernoff (Ed.), Landes Biosciences publisher, Georgetown, USA.
- Bétermier, M. (2007) Eléments génétiques mobiles et leur rôle dans l'assemblage des génomes. HDR, Université Denis Diderot (Paris7).
- Bigot, S., Sivanathan, V., Possoz, C., Barre, F.-X. and Cornet, F. (2007) FtsK, a literate chromosome segregation machine. Review. Mol Microbiol, 64 (6) 1434-41.
- Bonnefoy, N. and Fox, T. D. (2007) Directed alteration of Saccharomyces cerevisiae mitochondrial DNA by biolistic transformation and homologous recombination. in Methods in Mol Biol: Mitochondria 372, 153-166, D. Leister and J. M. Herrmann (Ed.), Humana Press Inc, Totowa, NJ.
- Bonnefoy, N., Remacle, C. and Fox, T. D. (2007) Genetic transformation of Saccharomyces cerevisiae and Chlamydomonas reinhardtii mitochondria. in Methods in Cell Biology: Mitochondria 80, 525-547, L. A. Pon and E. E. Schon (Ed.), Academic Press.
- Bossi, L. and Figueroa-Bossi, N. (2007) A small RNA downregulates LamB maltoporin in Salmonella. Mol Microbiol, 65 (3) 799–810.
- Bourrat, F. and Vervoort, M. (2007) Evolution du développement du système nerveux. Biofutur, 26 (281) 32-36.
- Buchet-Poyau, K., Courchet, J., Le Hir, H., Seraphin, B., Scoazec, J., Duret, L., Domon-Dell, C., Freund, J. and Billaud, M. (2007) Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies. Nucleic Acids Res, 35 (4) 1289-300.
- Buffin, E., Emre, D. and Karess, R. E. (2007) Flies without a spindle checkpoint. Nat Cell Biol, 9 (5) 565-72.
- Busson, D. and Pret, A.-M. (2007) UAS/Gal4 expression and useful drivers for Drosophila Hedgehog signaling. In Methods in Molecular Biology, 19 (1) 226-36 , Humana Press, New Jersey USA.
- Camier, S., Ma, E., Leroy, C., Pruvost, A., Toledano, M. and Marsolier-Kergoat, M. (2007) Visualization of ribonucleotide reductase catalytic oxidation establishes thioredoxins as its major reductants in yeast. Free Radic Biol Med, 42 (7) 1008-16.
- Camier, S. and Séraphin, B. (2007) Destroy this message after reading it! Médecine/Sciences, 23 (10) 850-856.
- Chauveau, F., Aissouni, Y., Hamm, J., Boutin, H., Libri, D., Ducongé, F. and Tavitian, B. (2007) Binding of an aptamer to the N-terminal fragment of VCAM-1. Bioorg Med Chem Lett, 17 (22) 6119-22.
- Chiron, S., Gaisne, M., Guillou, E., Belenguer, P., Clark-Walker, G. D. and Bonnefoy, N. (2007) Studying mitochondria in an attractive model: Schizosaccharomyces pombe. in Methods in Mol Biol: Mitochondria 372, 91-106, D. Leister and J. Herrmann (Ed.), Humana Press Inc, Totowa, NJ.
- Daniel, J. (2007) Direct in vivo access to potential gene targets of the RPD3 histone deactylase using fitness-based interferential genetics. YEAST, 24 (7) 575-87.
- Denes, A. S., Jekely, G., Steinmetz, P. R., Raible, F., Snyman, H., Prud'homme, B., Ferrier, D. E., Balavoine, G. and Arendt, D. (2007) Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria. Cell, 129 (2) 277-88.
- Dziembowski, A., Lorentzen, E., Conti, E. and Seraphin, B. (2007) A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nat Struct Mol Biol, 14 (1) 15-22.
- Esnault, E., Valens, M., Espéli, O. and Boccard, F. (2007) Chromosome Structuring Limits Genome Plasticity in Escherichia coli. PLoS Genet, 3 (12) e226.
- Fon Tacer, K., Kuzman, D., Seliskar, M., Pompon, D. and Rozman, D. (2007) TNF-{alpha} interferes with lipid homeostasis and activates acute and pro-atherogenic processes Physiol Genomics, 31 (2) 216-227.
- Gabriel, K., Milenkovic, D., Chacinska, A., Muller, J., Guiard, B., Pfanner, N. and Meisinger, C. (2007) Novel Mitochondrial Intermembrane Space Proteins as Substrates of the MIA Import Pathway. J Mol Biol, 365 (3) 612-20.
- Gogendeau, D. (2007) Etude des centrines et des protéines de type Sfi1 dans le réseau infraciliaire de la paramécie. Thèse, Université Paris Sud 11 - Orsay.
- Gogendeau, D., Beisson, J., Garreau de Loubresse, N., Le Caer, J.-P., Ruiz, F., Cohen, J., Sperling, L., Koll, F. and Klotz, C. (2007) A Sfi1p-like Centrin-Binding Protein mediates centrin based Ca2+-dependent contractility in Paramecium. Eukaryot Cell, 6 (11) 1992-2000.
- Guilmeau, S., Niot, I., Laigneau, J.-P., Devaud, H., Petit, V., Brousse, N., Bouvier, R., Ferkdadji, L., Besmond, C., Aggerbeck, L.-P., Bado, A. and Samson-Bouma, M. (2007) Decreased expression of Intestinal I- and L-FABP levels in rare human genetic lipid malabsorption syndromes. Histochem Cell Biol, 128 (2) 115-23.
- Hui, J. H. L., Kortchagina, N., Arendt, D., Balavoine, G. and Ferrier, D. E. K. (2007) Duplication of the ribosomal gene cluster in the marine polychaete Platynereis dumerilii correlates with ITS polymorphism. Journal of the Marine Biological Association of the United Kingdom 87 443-449.
- Huvet, M., Nicolay, S., Touchon, M., Audit, B., d'Aubenton-Carafa, Y., Arneodo, A. and Thermes, C. (2007) Human gene organization driven by the coordination of replication and transcription. Genome Res, 17 (9) 1278-1285.
- Krayl, M., Lim, J.-H., Martin, F., Guiard, B. and Voos, W. (2007) A cooperative action of the ATP-dependent import motor complex and the inner membrane potential drives mitochondrial preprotein import. Mol Cell Biol, 27 (2) 411-25.
- Kutik, S., Guiard, B., Meyer, H.-E., Wiedemann, N. and Pfanner, N. (2007) Cooperation of translocase complexes in mitochondrial protein import. J Cell Biol, 179 (4) 585-91.
- Laquel-Robert, P., Sellem, C., Sainsard-Chanet, A. and Castroviejo, M. (2007) Identification and biochemical analysis of a mitochondrial endonuclease of Podospora anserina related to curved-DNA binding proteins. Biochim Biophys Acta-General Subjects, 1770 (4) 527-42.
- Lee, J. H., Koh, H., Kim, M. S., Kim, Y., Lee, S. Y., Karess, R. E., Lee, S. H., Shong, M., Kim, J. M., Kim, J. and Chung, J. (2007) Energy-dependent regulation of cell structure by AMP-activated protein kinase. Nature, 447 (7147) 1017-20.
- Lemaitre, B. and Hoffmann, J. (2007) The Host Defense of Drosophila melanogaster. Annual Review of Immunology 25, (Ed.),
- Lemire, S., Figueroa-Bossi, N. and Bossi, L. (2007) Prophage Contribution to Salmonella Virulence and Diversity. In Horizontal Gene Transfer in the Evolution of Bacterial Pathogenesis Sous presse, M. Hensel and H. Schmidt (Ed.), Cambridge University Press, Cambridge, England.
- Lestini, R. and Michel, B. (2007) UvrD controls the access of recombination proteins to blocked replication forks. EMBO J, 26 (16) 3804-14.
- Liehl, P. (2007) Genetic analysis of Drosophila host defence to oral bacterial infection. Thèse, Université Pierre et Marie Curie (Paris 6).
- Lorentzen, E., Dziembowski, A., Lindner, D., Seraphin, B. and Conti, E. (2007) RNA channelling by the archaeal exosome. EMBO Reports, 8 (5) 470-6.
- Maas, M. F., Sellem, C. H., Hoekstra, R. F., Debets, A. J. and Sainsard-Chanet, A. (2007) Integration of a pAL2-1 homologous mitochondrial plasmid associated with life span extension in Podospora anserina. Fungal Genet Biol, 44 (7) 659-71.
- Marchadier, B. (2007) Etude de l'assemblage et des fonctions du complexe EJC (Exon Junction Complex). Thèse, Université Paris-Sud 11.
- Marisa, L., Ichanté, J.-L., Reymond, N., Aggerbeck, L., Delacroix, H. and Mucchielli-Giorgi, M.-H. (2007) MAnGO: an interactive R-based tool for two-colour microarray analysis. Bioinformatics, 23 (17) 2339-41.
- Matsunaga, F., Glatigny, A., Mucchielli-Giorgi, M.-H., Agier, N., Delacroix, H., Marisa, L., Durosay, P., Ishino, Y., Aggerbeck, L. P. and Forterre, P. (2007) Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp. Nucleic Acids Res, 35 (10) 3214-22.
- Meisinger, C., Pfannschmidt, S., Rissler, M., Milenkovic, D., Becker, T., Stojanovski, D., Youngman, M. J., Jensen, R.-E., Chacinska, A., Guiard, B., Pfanner, N. and Wiedemann, N. (2007) The morphology proteins Mdm12/Mmm1 function in the major beta-barrel assembly pathway of mitochondria. EMBO J, 26 (9) 2229-39.
- Michel, B., Boubakri, H., Baharoglu, Z., Lemasson, M. and Lestini, R. (2007) Recombination proteins and rescue of arrested replication forks. DNA Repair (Amst), 6 (7) 967-80.
- Michel, F., Costa, M., Doucet, A. J. and Ferat, J.-L. (2007) Specialized lineages of bacterial group II introns. Biochimie, 89 (4) 542-53.
- Milenkovic, D., Gabriel, K., Guiard, B., Schulze-Specking, A., Pfanner, N. and Chacinska, A. (2007) Biogenesis of the essential Tim9-Tim10 chaperone complex of mitochondria: site-specific recognition of cysteine residues by the intermembrane space receptor Mia40. J Biol Chem, 282 (31) 22472-80.
- Nicolay, S., Brodie of Brodie, E. B., Touchon, M., Audit, B., d'Aubenton-Carafa, Y., Thermes, C. and Arneodo, A. (2007) Bifractality of human DNA strand-asymmetry profiles results from transcription. Physical Review E 75 (3-1) 032902.
- Nouet, C., Bourens, M., Hlavacek, O., Marsy, S., Lemaire, C. and Dujardin, G. (2007) Rmd9p controls the processing/stability of mitochondrial mRNAs and its overexpression compensates for a partial deficiency of Oxa1p in Saccharomyces cerevisiae. Genetics, 175 (3) 1105-15.
- Ouchane, S., Picaud, M., Therizols, P., Reiss-Husson, F. and Astier, C. (2007) Global Regulation of Photosynthesis and Respiration by FnrL. The first two targets in thetetrapyrrole pathway. J Biol Chem, 282 (2) 7690-9
- Panic, L., Montagne, J., Cokaric, M. and Volarevic, S. (2007) S6-haploinsufficiency activates the p53 tumor suppressor. Cell Cycle, 6 (1) 20-4.
- Pompon, D. and Laisné, A. (2007) PDNA as building blocks for membrane-guided self-assemblies. Biochem Soc Trans, 35 (Pt 3) 495-7.
- Puig, O., Bragado-Nilsson, E., Koski, T. and Séraphin, B. (2007) The U1 snRNP-associated factor Luc7p affects 5' splice site selection in yeast and human. Nucleic Acids Res, 35 (17) 5874-85.
- Ribeiro, P.-S., Kuranaga, E., Tenev, T., Leulier, F., Miura, M. and Meier, P. (2007) IAP2 functions as a mechanism-based regulator of drICE that contributes to the caspase activity threshold in living cells. J Cell Biol, 179 (7) 1467-80.
- Rougemaille, M. (2007) Interactions entre transcription, maturation et dégradation de l'ARN chez Saccharomyces cerevisiae. Thèse, Université Paris-Sud 11 - Orsay.
- Rougemaille, M., Gudipati, R. K., Olesen, J. R., Thomsen, R., Seraphin, B., Libri, D. and Jensen, T. (2007) Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J, 26 (9) 2317-26.
- Rousset, S., Mozo, J., Dujardin, G., Emre, Y., Masscheleyn, S., Ricquier, D. and Cassard-Doulcier, A.-M. (2007) UCP2 is a mitochondrial transporter with an unusual very short half-life. FEBS Lett, 581 (2) 479-82.
- Sanjuan Szklarz, L., Kozjak-Pavlovic, V., Vogtle, F., Chacinska, A., Milenkovic, D., Vogel, S., Durr, M., Westermann, B., Guiard, B., Martinou, J., Borner, C., Pfanner, N. and Meisinger, C. (2007) Preprotein Transport Machineries of Yeast Mitochondrial Outer Membrane Are not Required for Bax-induced Release of Intermembrane Space Proteins. J Mol Biol, 368 (1) 44-54.
- Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. and Cavalli, G. (2007) Genome regulation by polycomb and trithorax proteins (Review). Cell, 128 (4) 735-45
- Sellem, C.-H., Marsy, S., Boivin, A., Lemaire, C. and Sainsard-Chanet, A. (2007) A mutation in the gene encoding cytochrome c1 leads to a decreased ROS content and to a long-lived phenotype in the filamentous fungus Podospora anserina. Fungal Genet Biol, 44 (7) 648-58.
- Simionato, E., Barrios, N., Duloquin, L., Boissonneau, E., Lecorre, P. and Agnes, F. (2007) The Drosophila RNA-binding protein ELAV is required for commissural axon midline crossing via control of commissureless mRNA expression in neurons. Dev Biol, 301 (1) 166-77.
- Simionato, E., Ledent, V., Richards, G., Thomas-Chollier, M., Kerner, P., Coornaert, D., Degnan, B. M. and Vervoort, M. (2007) Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. BMC Evol Biol, 7 (33) 1-18.
- Simón, E. and Séraphin, B. (2007) A specific role for the C-terminal region of the Poly(A)-binding protein in mRNA decay. Nucleic Acids Res, 35 (18) 6017-28.
- Soleimanpour-Lichaei, H.-R., Kühl, I., Gaisne, M., Passos, J.-F., Wydro, M., Rorbach, J., Temperley, R., Bonnefoy, N., Tate, W., Lightowlers, R. and Chrzanowska-Lightowlers, Z. (2007) mtRF1a Is a Human Mitochondrial Translation Release Factor Decoding the Major Termination Codons UAA and UAG. Mol Cell, 27 (5) 745-57.
- Stojanovski, D., Guiard, B., Kozjak-Pavlovic, V., Pfanner, N. and Meisinger, C. (2007) Alternative function for the mitochondrial SAM complex in biogenesis of {alpha}-helical TOM proteins. J Cell Biol, 179 (5) 881-93.
- Taly, V., Urban, P., Truan, G. and Pompon, D. (2007) A combinatorial approach to substrate discrimination in the P450 CYP1A subfamily. Biochim Biophys Acta (General Subjects), 1770 (3) 446-57.
- Tang, T., François, N., Glatigny, A., Agier, N., Mucchielli, M., Aggerbeck, L. and Delacroix, H. (2007) Expression ratio evaluation in two-colour microarray experimentsis significantly improved by correcting image mis-alignment. Bioinformatics, 23 (20) 2686-91.
- van der Laan, M., Meinecke, M., Dudek, J., Hutu, D.-P., Lind, M., Perschil, I., Guiard, B., Wagner, R., Pfanner, N. and Rehling, P. (2007) Motor-free mitochondrial presequence translocase drives membrane integration of preproteins. Nat Cell Biol, 9 (20) 1152-1159.
- Wenz, T., Covian, R., Hellwig, P., Macmillan, F., Meunier, B., Trumpower, B. and Hunte, C. (2007) Mutational analysis of cytochrome b at the ubiquinol oxidation site of yeast complex III. J Biol Chem, 282 (6) 3977-88.
- Wiesenberger, G., Speer, F., Haller, G., Bonnefoy, N., Schleiffer, A. and Schäfer, B. (2007) RNA degradation in fission yeast mitochondria is stimulated by a member of a new family of proteins that are conserved in lower eucaryotes. Journal of Molecular Biology, 367 (3) 681-91.
- Williams, E. H., Butler, C. A., Bonnefoy, N. and Fox, T. D. (2007) Translation initiation in Saccharomyces cerevisiae mitochondria: Functional interactions among mitochondrial ribosomal protein Rsm28p, initiation factor 2, methionyl-tRNA-formyltransferase, and novel protein Rmd9p Genetics 175 (3) 1117-26.
- Zaidman-Rémy, A. (2007) Analyse génétique de la fonction des peptidoglycan recognition proteins dans la réponse immunitaire de la drosophile. Thèse, Université Denis Diderot - Paris 7.
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