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CGM - Centre de Génétique Moléculaire

Les publications des chercheurs du CGM : 2003

 

ligne séparation   MàJ : 12/03/07

 

Publications 2003 : 86 références

 

- Abecassis, V. (2003) Approches combinatoires appliquées à l'étude de la diversité fonctionnelle des cytochromes P450. Thèse, Paris V.

- Abecassis, V., Aggerbeck, L., Truan, G. and Pompon, D. (2003) Computational methods for sequence mapping of large combinatorial libraries and deduced sequence signatures. Biotechniques, 34 (6) 1280-6.

- Abecassis, V., Jaffrelo, L., Rickman, D., Aggerbeck, L., Herbert, C., Truan, G. and Pompon, D. (2003) Microarray-based method for combinatorial library sequence mapping and characterization. Biotechniques, 34 (6) 1272-9.

- Abecassis, V., Pompon, D. and Truan, G. (2003) Producing chimeric genes by CLERY: in vitro and in vivo recombination. in Methods in Molecular Biology 231, F. H. Arnold and G. Georgiou (Ed.), Humana Press, Totowa, NJ.

- Abecassis, V., Truan, G., Jaffrelo, L. and Pompon, D. (2003) Sequence mapping of combinatorial libraries on macro- or micro-arrays: experimental design of DNA arrays. in Methods in Molecular Biology 231, F. H. Arnold and G. Georgiou (Ed.), Humana Press, Totowa, NJ.

- Abecassis, V., Urban, P., Truan, G. and Pompon, D. (2003) Exploration of natural and artificial sequence spaces: towards a functionnal remodelling of membrane-bound cytochrome P450s. Biocatalysis and Biotransformation, 21 (2) 55-66(12).

- Arneodo, A., Audit, B., Vaillant, C., d'Aubenton-Carafa, Y. and Thermes, C. (2003) Extracting structural and dynamical informations from wavelet-based analysis of DNA sequences. in GROUP 24: Physical and Mathematical Aspects of Symmetries J.-P. Gazeau, R. R. Kerner, J.-P. Antoine, S. Metens and J.-Y. Thibon (Ed.), IOPP Publishing, Bristol.

- Balavoine, G. (2003) L'évolution des animaux et l'origine du cerveau. in Gènes et culture J.-P. Changeux (Ed.), Odile Jacob, Paris.

- Balavoine, G. and Adoutte, A. (2003) The segmented Urbilateria : a testable hypothesis. Integ Comp Biol, 43 137-147.

- Balavoine, G., Prud'homme, B., de Rosa, R., Julien, J.-F. and Adoutte, A. (2003) Origine évolutive de la segmentation : les segments des annélides sont-ils homologues des parasegments des arthropodes ? Biosystema, 21 5-12.

- Basset, A., Tzou, P., Lemaitre, B. and Boccard, F. (2003) A single gene that promotes interaction of a phytopathogenic bacterium with its insect vector, Drosophila melanogaster. EMBO Rep, 4 (2) 205-209.

- Baudin-Baillieu, A., Fernandez-Bellot, E., Reine, F., Coissac, E. and Cullin, C. (2003) Conservation of the prion properties of Ure2p through evolution. Mol Biol Cell, 14 (8) 3449-58.

- Beisson, J. and Wright, M. (2003) Basal body/centriole assembly and continuity. Curr Op Cell Biol, 15 (1) 96-104.

- Bernard, D. G., Gabilly, S., Dujardin, G., Merchant, S. and Hamel, P. P. (2003) Overlapping Specificities of the Mitochondrial Cytochrome c and c1 Heme Lyases. J Biol Chem, 278 (50) 49732-42.

- Bosher, J., Hahn, B., Legouis, R., Sookhareea, S., Weimer, R., Gansmuller, A., Chisholm, A., Rose, A., Bessereau, J. and Labouesse, M. (2003) The Caenorhabditis elegans vab-10 spectraplakin isoforms protect the epidermis against internal and external forces. J Cell Biol, 161 (4) 757-68.

- Bossi, L., Fuentes, J., Mora, G. and Figueroa-Bossi, N. (2003) Prophage contribution to bacterial population dynamics. J Bacteriol, 185 (21) 6467-71.

- Buschlen, S., Amillet, J.-M., Guiard, B., Fournier, A., Marcireau, C. and Bolotin-Fukuhara, M. (2003) The S. cerevisiae HAP complex, a key regulator of mitochondrial function, coordinates nuclear and mitochondrial gene expression. Functional and Comparative Genomics, 4 37-46.

- Cerchia, L., Libri, D., Carlomagno, M. S. and De Franciscis, V. (2003) The soluble ectodomain of Ret C634Y inhibits both the wild type and the constitutively active Ret. Biochem J, 372 (3) 897-903.

- Chacinska, A., Rehling, P., Guiard, B., Frazier, A., Schulze-Specking, A., Pfanner, N., Voos, W. and Meisinger, C. (2003) Mitochondrial translocation contact sites: separation of dynamic and stabilizing elements in formation of a TOM-TIM-preprotein supercomplex. EMBO J, 22 (20) 5370-81.

- Charlet, N. (2003) Etude de régulation de l'épissage alternatif de la troponine T cardiaque et du canal chlore. Thèse, Paris VII.

- Conte, N., Delaval, B., Ginestier, C., Ferrand, A., Isnardon, D., Larroque, C., Prigent, C., Seraphin, B., Jacquemier, J. and Birnbaum, D. (2003) TACC1-chTOG-Aurora A protein complex in breast cancer. Oncogene, 22 (50) 8102-16.

- Crespi, M., Campalans, A., Thermes, C. and Kondorosi, A. (2003) New perspectives on noncoding or short ORF-encodint RNAs. in Plants Noncoding RNAs: Molecular Biology and Molecular Medicine J. Barciszewski and V. A. Erdmann (Ed.), Landes Bioscience, Georgetown.

- Dheur, S., Vo, L., Voisinet-Hakil, F., Minet, M., Schmitter, J., Lacroute, F., Wyers, F. and Minvielle-Sebastia, L. (2003) Pti1p and Ref2p found in association with the mRNA 3'-end formation complex direct snoRNA maturation. EMBO J, 22 (11) 2831-40.

- Duport, C., Schoepp, B., E., C., Spagnoli, R., Dumas, B. and Pompon, D. (2003) Critical role of the plasma membrane for expression of mammalian mitochondrial side chain cleavage activity in yeast. Eur J Biochem., 270 (7) 1502-1514.

- Espeli, O., Lee, C. and Marians, K. (2003) A physical and functional interaction between Escherichia coli FtsK and topoisomerase IV. J Biol Chem, 278 (45) 44639-44.

- Espeli, O., Levine, C., Hassing, H. and Marians, K. (2003) Temporal regulation of topoisomerase IV activity in E. coli. Mol Cell Biol, 11 (1) 189-201.

- Espeli, O., Nurse, P., Levine, C., Lee, C. and Marians, K. (2003) SetB: an integral membrane protein that affects chromosome segregation in Escherichia coli. Mol Microbiol, 50 (2) 495-509.

- Eystathioy, T., Jakymiw, A., Chan, E., Seraphin, B., Cougot, N. and Fritzler, M. J. (2003) The GW182 protein colocalizes with mRNA degradation associated proteins hDcp1 and hLSm4 in cytoplasmic GW bodies. RNA, 9 (10) 1171-3.

- Ferat, J., Le Gouar, M. and Michel, F. (2003) A group II intron has invaded the genus Azotobacter and is inserted within the termination codon of the essential groEL gene. Mol Microbiol, 49 (5) 1407-23.

- Fernet, C. (2003) Altérations de l'ADN mitochondrial chez la levure "petite négative" I; implications fondamentales et appliquées. Thèse, Paris VI.

- Frazier, A., Chacinska, A., Truscott, K., Guiard, B., Pfanner, N. and Rehling, P. (2003) Mitochondria use different mechanisms for transport of multispanning membrane proteins through the intermembrane space. Mol Cell Biol, 23 (21) 7818-28.

- Froissard, M. (2003) Etude génétique et moléculaire de l'exocytose régulée chez la paramécie. Thèse, Versailles Saint-Quentin.

- Girardin, S. E., Philpott, D. and Lemaitre, B. (2003) Sensing Microbes by diverses hosts (meeting review). EMBO Rep, 4 (10) 976-981.

- Golik, P., Bonnefoy, N., Szczepanek, T., Saint-Georges, Y. and Lazowska, J. (2003) The Rieske FeS proteine encoded and synthesized within mitochondria complements a deficiency in the nuclear gene. Proc Natl Acad Sci USA, 100 (15) 8844-9.

- Hahn, B., Bosher, J., Legouis, R., Sookhareea, S., Weimer, R., Gansmuller, A., Chisholm, A., Rose, A., Bessereau, J. and Labouesse, M. (2003) The C. elegans vab-10 spectraplakin isoforms protect the epidermis against internal and external forces. J Cell Biol, 161 757-68.

- Janin, J. and Seraphin, B. (2003) Genome-wide studies of protein-protein interaction. Curr Op Struct Biol, 13 (3) 383-8.

- Jensen, T., Dower, K., Libri, D. and Rosbash, M. (2003) Early formation of mRNP: license for export or quality control? Mol Cell, 11 (5) 1129-38.

- Klotz, C., Ruiz, F., Garreau de Loubresse, N., Wright, M., Dupuis-Williams, P. and Beisson, J. (2003) Gamma-tubulin and MTOCs in Paramecium. Protist, 154 (2) 193-209.

- Koprowski, P., Fikus, M. U., Dzierzbicki, P., Mieczkowski, P., Lazowska, J. and Ciesla, Z. (2003) Enhanced expression of the DNA damage-inducible gene of Saccharomyces cerevisiae, DIN7, results in increased mutagenesis of mitochondrial DNA. Mol Gen Genomics, 269 (5) 632-9.

- Kozjak, V., Wiedemann, N., Milenkovic, D., Lohaus, C., Meyer, H., Guiard, B., Meisinger, C. and Pfanner, N. (2003) An essential role of sam50 in the protein sorting and assembly machinery of the mitochondrial outer membrane. J Biol Chem, 278 (49) 48520-3.

- Kuras, L., Borggrefe, T. and Kornberg, R. (2003) Association of the Mediator complex with enhancers of active genes. Proc Natl Acad Sci U S A., 100 (24) 13887-91.

- Le Gouar, M., Lartillot, N., Adoutte, A. and Vervoort, M. (2003) The expression of a caudal homologue in a mollusc, Patella vulgata. Gene Expr Pattern, 3 35-37.

- Le Hir, H., Nott, A. and Moore, M. (2003) How introns influence and enhance eukaryotic gene expresion. Trends Biochem Sci, 28 (4) 215-220.

- Legouis, R., Jaulin-Bastard, F., Schott, S., Navarro, C., Borg, J. and Labouesse, M. (2003) Basolateral targeting by leucine-rich repeat domains in epithelial cells. EMBO Rep, 4 (11) 1096-102.

- Letty, J., Hivert, J., Queney, G., Aubineau, J., Monnerot, M. and Marchandeau, S. (2003) Evaluation de l'introgression génétique suite à un renforcement de populations chez le lapin de garenne. Actes du 4ème colloque du Bureau des Ressources Génétiques, in press

- Leulier, F. (2003) Analyse de la réponse immunitaire de Drosophila melanogaster. Thèse, Paris VII.

- Leulier, F., Marchal, C., Miletich, I., Limbourg-Bouchon, B., Benarous, R. and Lemaitre, B. (2003) Directed expression of the HIV-1 accessory protéine Vpu in Drosophila fat body cells inhibits Toll-dependent immune responses. EMBO Rep, 4 (10) 976-81.

- Leulier, F., Parquet, C., Pili-Floury, S., Ryu, J. H., Caroff, M., Lee, W. J., Mengin-Lecreulx, D. and Lemaitre, B. (2003) The Drosophila immune system detects bacteria through specific peptidoglycan recognition. Nat Immunol, 4 (5) 478-484.

- Li, K., Pasternak, C. and Klug, G. (2003) Expression of the trxA gene for thioredoxin 1 in Rhodobacter sphaeroides during oxidative stress. Arch Microbiol, 180 (6) 484-9.

- Libri, D. (2003) -. HDR, Paris XI.

- Messaoudi, C., Boudier, T., J.-P., L., Rigaud, J.-L., Delacroix, H., Gaill, F. and Marco, S. (2003) Use of cryo-negative staining in tomographic reconstruction of complex symmetry virus. Biol Cell, 95 (6) 393-8.

- Michellod, M. A. (2003) Caractérisation génétique et moléculaire du gène neurogenique almondex de Drosophila melanogaster, un partenaire de la voie de signalisation Notch. Thèse, Paris 6.

- Michellod, M. A., Forquignon, F., Santamaria, P. and Randsholt, N. B. (2003) Differential requirements for the neurogenic gene almondex during Drosophila melanogaster development. Genesis, 37 (3) 113-22.

- Moulin, L. (2003) Implication de l'ADN Gyrase dans différents phénomènes topologiques et transcriptionnels chez la bactérie Escherichia coli. Thèse, Paris XI.

- Mounolou, J. C., Queney, G., Bolet, G., Dennebouy, N. and Monnerot, M. (2003) Integrative biology and genetic ressources management. Integ Comp Biol, 43 (IN PRESS)

- Papadimou, E., Pavlidou, D., Seraphin, B., Tsambaos, D. and Drainas, D. (2003) Retinoids inhibit human epidermal keratinocyte RNase P activity. Biol Chem, 384 (457-62)

- Pinta, V., Ouchane, S., Picaud, M., Takaichi, S., Astier, C., Reiss-Husson, F. and Astier, C. (2003) Characterization of unusual hydroxy- and ketocarotenoids in Rubrivivax gelatinosus: involvement of enzyme CrtF or CrtA. Arch Microbiol, 179 (354-362)

- Pompon, D., Truan, G. and Abecassis, V. (2003) Sequence mapping of combinatorial libraries on macro- or micro-arrays: bioinformatic treatment of data. in Methods in Molecular Biology 231, F. H. Arnold and G. Georgiou (Ed.), Humana Press, Totowa, NJ.

- Prud'homme, B. (2003) Origine évolutive de la segmentation chez les bilatériens: étude de la formation des segments chez l'annélide Platynereis dumerilii. Thèse, Paris VI.

- Prud'homme, B., de Rosa, R., Arendt, D., Julien, J.-F., Pajaziti, R., Dorresteijn, A., Adoutte, A., Wittbrodt, J. and Balavoine, G. (2003) Arthropod-like expression patterns of engrailed and wingless in the annelid Platynereis dumerilii suggest a role in segment formation. Curr Biol, 13 (21) 1876-81.

- Raux, E., Leech, H., Beck, R., Schubert, H., Santander, P., Roessner, C., Scott, A., Martens, J., Jahn, D., Thermes, C., Rambach, A. and Warren, M. (2003) Identification and functional analysis of enzymes required for precorrin-2-dehydrogenation and functional metal ion insertion in the biosynthesis of sirohem and cobalamin in Bacillus megaterium. Biochem J, 370 505-516.

- Rickman, D. S., Herbert, C. J. and Aggerbeck, L. P. (2003) Optimizing spotting solutions for increased reproducibility of cDNA microarrays. Nucleic Acids Res, 31 (18) e109.

- Saint-Georges, Y. (2003) Contribution à l'étude de l'assemblage des complexes respiratoires chez Saccharomyces cerevisae. Thèse, Paris XI.

- Sargueil, B., Hampel, K., Lambert, D. and Burke, J. (2003) In vitro selection of second site revertants analysis of the hairpin ribozyme active site. J Biol Chem, 278 (52) 52783-91.

- Schell, T., Kocher, T., Wilm, M., Seraphin, B., Kulozik, A. and Hentze, M. (2003) Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells. Biochem J, 375 (3) 775-783.

- Senapin, S., Clark-Walker, G., Chen, X., Seraphin, B. and Daugeron, M. (2003) RRP20, a component of the 90S preribosome, is required for pre-18S rRNA processing in Saccharomyces cerevisiae. Nucleic Acids Res, 31 (10) 2524-33.

- Sickmann, A., Reinders, J., Wagner, Y., Joppich, C., Zahedi, R., Meyer, H., Schonfisch, B., Perschil, I., Chacinska, A., Guiard, B., Rehling, P., Pfanner, N. and Meisinger, C. (2003) The proteome of Saccharomyces cerevisiae mitochondria. Proc Natl Acad Sci U S A., 100 (23) 13207-12.

- Silar, P., Barreau, C., Debuchy, R., Kicka, S., Turcq, B., Sainsard-Chanet, A., Sellem, C. H., Billault, A., Cattolico, L. and Weissenbach, J. (2003) Characterization of the Genomic Organization of the Region around the Centromere of Chromosome V of Podospora anserina by direct sequencing. Fungal Genetics Biol, 39 (3) 250-63.

- Sylvestre, J., Margeot, A., Jacq, C., Dujardin, G. and Corral-Debrinski, M. (2003) The role of the 3' UTR in mRNA sorting to the vicinity of mitochondria is conserved from yeast to human cells. Mol Biol Cell, 14 (9) 3848-56.

- Szczebara, F., Chandelier, C., Villeret, C., Masurel, A., Bourot, S., Duport, C., Blanchard, S., Groisillier, A., Testet, E., Costaglioli, P., Cauet, G., Degryse, E., Balbuena, D., Winter, J., Achstetter, T., Spagnoli, R., Pompon, D. and Dumas, B. (2003) Total biosynthesis of hydrocortisone from a simple carbon source in yeast. Nat Biotechnol., 21 (2) 143-149.

- Szyrach, G., Ott, M., Bonnefoy, N., Neupert, W. and Herrmann, J. (2003) Ribosome binding to the Oxa1 complex facilitates co-translational protein insertion in mitochondria. EMBO J, 22 (24) 6448-57.

- Taly, A. (2003) Coupled electron and proton transfers in the photosynhtic reaction center from Rhodobacter sphaeroides. Combined experimental and molecular modeling approaches. Thèse, Paris XI.

- Taly, A., Sebban, P., Slith, J. C. and M.G., U. (2003) The position of QB in the photosynthetic reaction center depends on pH: a theoretical analysis of the proton uptake upon QB reduction. Biophys J, 84 (3) 2090-8.

- Tanner, N., Cordin, O., Banroques, J., Doere, M. and Linder, P. (2003) The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Mol Cell, 11 (1) 127-38.

- Thomsen, R., Libri, D., Boulay, J., Rosbash, M. and Jensen, T. (2003) Localization of nuclear retained mRNAs in Saccharomyces cerevisiae. RNA, 9 (9) 1049-57.

- Thore, S., Mauxion, F., Seraphin, B. and Suck, D. (2003) X-ray structure and activity of the yeast Pop2 protein: a nuclease subunit of the mRNA deadenylase complex. EMBO Rep, 4 (12) 1150-5.

- Touchon, M., Nicolay, S., Arneodo, A., d'Aubenton-Carafa, Y. and Thermes, C. (2003) Transcription-coupled TA and GC strand asymmetries in the human genome. FEBS Lett, 555 (3) 579-582.

- Truscott, K., Voos, W., Frazier, A., Lind, M., Li, Y., Dudek, J., Muller, H., Sickmann, A., Meyer, H., Meisinger, C., Guiard, B., Rehling, P. and Pfanner, N. (2003) A J-protein is an essential subunit of the presequence translocase-associated protein import motor of mitochondria. J Cell Biol, 163 (4) 707-13.

- Vaillant, C., Audit, B., Thermes, C. and Arneodo, A. (2003) Influence of the sequence on elastic properties of long DNA chains. Phys Rev E Stat Nonlin Soft Matter Phys., 67 (3pt1) 032901.

- van Dijk, E., Le Hir, H. and Seraphin, B. (2003) DcpS can act in the 5'-3' mRNA decay pathway in addition to the 3'-5' pathway. Proc Natl Acad Sci USA, 100 (21) 12081-6.

- Vidal, S. (2003) Voies de signalisation gouvernant la réponse immunitaire de la Drosophile. Thèse, Paris XI.

- Vignols, F., Mouaheb, N., Thomas, D. and Meyer, Y. (2003) Redox control of Hsp70-Co-chaperone interaction revealed by expression of a thioredoxin-like Arabidopsis protein. J Biol Chem, 278 4516-4523.

- Vo, L. (2003) L'étude du rôle du complexe de polyadénylation dans la maturation de l'extrémité 3' des ARN codants et non codants de l'ARN polymérase II chez S. cerevisiae. Thèse, Paris XI.

- Zagulski, M., Kressler, D., Bécam, A.-M., Rytka, J. and Herbert, C. (2003) Mak5p, which is required for the maintenance of the M1 dsRNA virus, is encoded by the yeast ORF YBR142w and involved in the biogenesis of the 60S subunit of the ribosome. Mol Genet Genomics, 270 (3) 216-24.

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