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CGM - Centre de Génétique Moléculaire

Les publications des chercheurs du CGM : 2001

 

ligne séparation   MàJ : 16/10/08

 

Publications 2001 : 87 références

 

- Abecassis, V., Pompon, D. and Truan, G. (2001) Design and characterization of a novel "family-shuffling" technology adapted to membrane enzyme: application to P450s involved in xenobiotic metabolism. Adv Exp Med Biol, 500 319-22.

- Audit, B., Thermes, C., d'Aubenton-Carafa, Y., Vaillant, C., Muzy, J. F. and Arneodo, A. (2001) Long-range correlations in genomic DNA : a signature of nucleosomal DNA. Phys Rev Let, 86 2471-2474.

- Ballan-Dufrançais, C., Jeantet, A. Y., Jeffard, A., Amiard-Triquet, C. and Amiard, J.-C. (2001) Cellular and tissular distribution of copper in an intrasedimentary bivalve, the Baltic clam Macoma balthica; originating from a clean or a metal-rich site. J Can Sci Halieut Aquat, 58 (10) 1964-1974.

- Barome, P.-O., Lymberakis, P., Monnerot, M. and Gautun, J.-C. (2001) Cytochrome b sequences reveal Acomys minous (Rodentia, Muridae) paraphyly and answer the question about the ancestral kaaryotype of Acomys dimidiatus. Mol Phylogenet Evol, 18 (1) 37-46.

- Barome, P.-O., Volobouev, V., Monnerot, M., Kazgeba Mfune, J., Chitaukali, W., Gautun, J.-C. and Denys, C. (2001) Phylogeny of Acomys spinosissimus (Rodentia, Muridae) from north Malawi and Tanzania: evidences from morphological and molecular analysis. Biological Journal of the Linnean Society, 73 321-340.

- Bastin, P., Galvani, A. and Sperling, L. (2001) Genetic interference in protozoa. Res Microbiol, 153 123-129.

- Baudouin-Cornu, P., Surdin-Kerjan, Y., Marliere, P. and Thomas, D. (2001) Molecular evolution of protein atomic composition. Science, 293 (5528) 297-300.

- Becam, A., Nasr, F., Racki, W., Zagulski, M. and Herbert, C. (2001) Ria1p (Ynl163c), a protein similar to elongation factor 2, is involved in the biogenesis of the 60S subunit of the ribosome in Saccharomyces cerevisiae. Mol Genet Genomics, 266 454-462.

- Becskei, A., Seraphin, B. and Serrano, L. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J, 20 (10) 2528-2535.

- Beisson, J., Clerot, J., Fleury-Aubusson, A., Garreau de Loubresse, N., Ruiz, F. and Klotz, C. (2001) Basal body-associated nucleation center for the centrin-based cortical cytoskeletal network in Paramecium. Protist, 152 (4) 339-54.

- Berriot-Varoqueaux, N., Dannoura, A. H., Moreau, A., Verthier, N., Sassolas, A., Cadiot, G., Lachaux, A., Munck, A., Schmitz, J., Aggerbeck, L. P. and Samson-Bouma, M. E. (2001) Apolipoprotein B48 glycosylation in ablipoproteinemia and Anderson's disease. Gastroenterology, 121 (5) 1101-1108.

- Blanquet, S., Mariol, S., Renaud, M., Alric, M. and Pompon, D. (2001) The Biodrug concept: an innovative approach to therapy. Trends Biotechnol, 19 (10) 393-400.

- Boccard, F., Déthiollaz, S., Engelhorn, M. and Geiselmann, J. (2001) In vivo UV laser footprinting. DNA-protein interactions 148, T. Moss (Ed.), Humana Press,

- Bonnefoy, N., Bsat, N. and Fox, T. D. (2001) Mitochondrial translation of Saccharomyces cerevisiae COX2 mRNA is controlled by the nucleotide sequence specifying the pre-Cox2p leader peptide. Mol Cell Biol, 21 2359-2372.

- Bonnefoy, N. and Fox, T. D. (2001) Genetic transformation of Saccharomyces cerevisiae mitochondria. Methods in Cell Biology: Mitochondria 65, L. A. Pon and E. E. Schon (Ed.).

- Brendolise, C. (2001) Contribution à l'étude de la fonction et de l'expression du gène RNA14 impliqué dans la polyadénylation des ARN messagers chez Saccharomyces cerevisiae. Thèse, Paris XI, Orsay.

- Casselyn, M., Perez, J., Tardieu, A., Vachette, P., Witz, J. and Delacroix, H. (2001) Spherical plant viruses: interactions in solution, phase diagrams and crystallization of brome mosaic virus. Acta Crystallogr D Biol Crystallogr, 57 (Pt 12) 1799-812.

- Daugeron, M., Kressler, D. and Linder, P. (2001) Dbp9p, a putative ATP-dependent RNA helicase involved in 60S-ribosomal-subunit biogenesis, functionally interacts with Dbp6p. RNA, 7 1317-1334.

- Daugeron, M. C., Mauxion, F. and Seraphin, B. (2001) The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation. Nucleic Acids Res, 29 (12) 2448-55.

- De Gregorio, E., Spellman, P. T., Rubin, G. M. and Lemaitre, B. (2001) Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays. Proc Natl Acad Sci USA, 98 (22) 12590-12595.

- Dessen, P., Zagulski, M., Gromadka, R., Plattner, H., Kissmehl, R., Meyer, E., Bétermier, M., Schultz, J., Linder, J., Pearlman, R., Kung, C., Forney, J., Satir, B., Van Houten, J., Keller, A., Froissard, M., Sperling , L. and Cohen, J. (2001) Paramecium genome survey: a pilot project. Trends Genet, 17 306-308.

- Devauchelle, A., Grossmann, A., Hénaut, A., Holschneider, M., Monnerot, M., Risler, J. L. and Torrésani, B. (2001) Rate matrices for analyzing large families of protein sequences. J Comput Biol, 8 (4) 381-399.

- Dubois, M., Demé, B., Gulik-Krzywicki, T., Dedieu, J., Vautrin, C., Desert, S., Perez, E. and Zemb, T. (2001) Self-assembly of regular hollow icosahedra in salt-free catanionic solutions. Nature, 411 672-675.

- Espéli, O., Moulin, L. and Boccard, F. (2001) Transcription attenuation in bacterial operons containing repetitive BIME elements. J Mol Biol, 314 375-386.

- Figueroa-Bossi, N., Uzzau, S., Maloriol, D. and Bossi, L. (2001) Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella. Mol Microbiol, 39 (2) 260-272.

- Froissard, M., Keller, A.-M. and Cohen, J. (2001) Nd9p, a novel protein with Armadillo-like repeats involved in exocytosis: physiological studies using allelic mutants in Paramecium. Genetics, 157 611-620.

- Galvani, A., Froissard, M. and Cohen, J. (2001) Meeting report: international conference on Paramecium, Honolulu 25-28 march 2201. Protist, 152 89-92.

- García-Machado, E., Robainas, A., Espinosa, G., Oliva-Suarez, M., Paez, J., Verdecia, N. and Monnerot, M. (2001) Population structure of the shrimp Penaeus notialis assessed using allozymes and mitochondrial DNA. Marine Biology, 138 (4) 701-707.

- Gari, E., Bossi, L. and Figueroa-Bossi, N. (2001) Growth-dependent DNA breakage and cell death in a gyrase mutant of Salmonella. Genetics, 159 1405-1414.

- Garreau de Loubresse, N., Ruiz, F., Beisson, J. and Klotz, C. (2001) Role of delta-tubulin in the C-tubule in assembly of Paramecium basal bodies. BMC Cell Biology, 2 4.

- Geiselmann, J. and Boccard, F. (2001) UV laser footprinting. Methods in Molecular Bioloy, 148 161-173.

- Gellon, L., Barbey, R., Auffret van der Kemp, P., Thomas, D. and Boiteux, S. (2001) Synergism between base excision repair, mediated by the DNA glycosylases Ntg1 and Ntg2, and nucleotide excision repair in the removal of oxidatively damaged DNA bases in Saccharomyces cerevisiae. Mol Genet Genomics, 265 (6) 1087-1096.

- Grandlund, M., Michel, F. and Norgren, M. (2001) Mutually Exclusive Distribution of IS1548 and GBSi1, an ActiveGroup II Intron Identified in Human Isolates of Group B Streptococci. J Bacteriol, 183 2560-2569.

- Guilbot, J., Benvegnu, T., Legros, N., Plusquellec, D., Dedieu, J. C. and Gulik, A. (2001) Efficient synthesis of unsymmetrical bolaamphiphiles for spontaneous formation of vesicles and disks qith a transmembrane organization. Langmuir, 17 (613-618)

- Jeantet, A. Y., Jeffard, A., Amiard-Triquet, C., Amiard, J.-C. and Ballan-Dufrançais, C. (2001) Cellular and tissular distribution of copper in an intrasedimentary bivalve, the Bathis clam Macoma balthica; ecological consequences. Canadian Journal of Fisheries and Aquatic Sciences, sous presse

- Jensen, T. H., Boulay, J., Rosbash, M. and Libri, D. (2001) The DECD box putative ATPase Sub2p is an early mRNA export factor. Curr Biol, 11 (21) 1711-5.

- Khush, R.S., Leulier, F., Lemaitre, B. (2001) Drosophila immunity: two paths to NF-kappaB. Trends Immunol 22 (5) 260-4

- Koll, F., Sidoti, C., Rincheval, V. and Lecellier, G. (2001) Mitochondrial membrane potential and ageing in Podospora anserina. Mech Ageing Dev, 122 (2) 205-17.

- Krzywicka, A., Beisson, J., Keller, A. M., Cohen, J., Jerka-Dziadosz, M. and Klotz, C. (2001) KIN241: a gene involved in cell morphogenesis in Paramecium tetraurelia reveals a novel protein family of cyclophilin-RNA interacting proteins (CRIPs) conserved from fission yeast to man. Mol Microbiol, 42 (1) 257-267.

- Kucharczyk, R., Dupre, S., Avaro, S., Haguenauer-Tsapis, R., Slonimski, P. and Rytka, J. (2001) The novel protein Ccz1p required for vacuolar assembly in Saccharomyces cerevisiae functions in the same transport pathway as Ypt7p. J Cell Sci, 113 4301-4311.

- Kucharczyk, R., Kierzek, A., Slonimski, P. P. and Rytka, J. (2001) The Ccz1 protein interacts with Ypt7 GTPase during fusion of multiple transport intermediates with the vacuole in S. cerevisiae. J Cell Sci, 114 3137-3145.

- Kuglstatter, A., Ermler, U., Michel, H., Baciou, L. and Fritzch, G. (2001) X-ray structure analyses of photosynthetic reaction center variants from Rhodobacter sphaeroides: structural changes induced by point mutations at position L209 modulate electron and proton transfer. Biochemistry, 40 (14) 4253-60.

- Kunic, B., Truan, G., Breskvar, K. and Pompon, D. (2001) Functions cloning based on azole resistance in S. cerevisiae and characterization of R. nigricans redox carriers differentially involved in P450 dependent response to progesterone stress. Mol Genet Genomics, 265 (5) 930-940.

- Ladavière, C., Toustou, M., Gulik-Krzywicki, T. and Tribet, C. (2001) Slow reorganization of small phosphatidylcholine vesicles upon adsorption of amphiphilic polymers. J Colloid Interface Sci, 241 178-187.

- Lambert, G., Fattal, E., Pinto-Alphandary, H., Gulik, A. and Couvreur, P. (2001) Polyisobutylcyanoacrylate nanocapsules containing an aqueous core for the delivery of oligonucleotides. Int J Pharm, 214 13-16.

- Lartillot, N. (2001) Une approche comparative de la gastrulation chez les Bilateria: étude des gènes Brachyury et fork head chez un mollusque, Patella vulgata. Thèse, Paris XI.

- Ledent, V. and Vervoort, M. (2001) The basic Helix-Loop-Helix protein family: comparative genomics and phylogenetic analysis. Genome Res, 11 754-770.

- Lefebvre-Legendre, L., Vaillier, J., Benabdelhak, H., Velours, J., Slonimski, P. and Di Rago, J. (2001) Identification of a nuclear gene (FMCI) required for the assembly/stability of yeast mitochondrial F1-ATPase in heat stress conditions. J Biol Chem, 276 6789-6796.

- Lespinet, O. (2001) La famille des gènes Snail. Caractérisation de deux nouveaux membres chez le mollusque Patella vulgata. Hypothèse sur leur fonction ancestrale chez les Bilateria. Thèse, Paris XI.

- Libri, D., Graziani, N., Saguez, C. and Boulay, J. (2001) Multiple roles for the yeast SUB2/yUAP56 gene in splicing. Genes Dev, 15 36-41

- Lim, J. H., Guiard, B., Pfanner, N. and Voos, W. (2001) The mitochondrial Hsp70-dependent import system actively unfolds prep shortens the lag phase of translocation. EMBO J, 20 (5) 941-950.

- Linder, P., Tanner, K. and Banroques, J. (2001) From RNA helicases to RNPases. Trends Biochem Sci, 26 339-341.

- Loeper, J., De Berardinis, V., Moulis, C., Beaune, P., Pessayre, D. and Pompon, D. (2001) Human epoxide hydrolase is the target of germander autoantibodies on the surface of human hepatocytes: enzymatic implications. Adv Exp Med Biol, 500 121-4.

- Lorin, S., Dufour, E., Boulay, J., Begel, O., Marsy, S. and Sainsard-Chanet, A. (2001) Overexpresion of the alternative oxidase restores senescence and fertiliy in a long-lived respiration deficient mutant of Podospora anserina. Mol Microbiol, 42 1259-1267.

- Marchi-Artzner, V., Gulik-Krzywicki, T., Guedeau-Boudeville, M. A., Sanderson, J. S., Dedieu, J. C., Gosse, C. and Lehn, J. M. (2001) Selective adhesion, lipid exchange and membrane-fusion processes between vesicles of various sizes bearing complementary molecular recognition groups. Physical Chemistry-Chemical Physics, 2 101-110.

- Marmillon, C., Gauffre, F., Gulik-Krzywicki, T., Loup, C., Chaminade, A. M., Majoral, J. P., J.P., V. and Rump, E. (2001) Organophosphorus dendrimers as new gelator for hydrogels. Angewandte Chemie., 40 2626-2629.

- McMahon, L., Legouis, R., Vonesch, J. and Labouesse, M. (2001) Assembly of C. elegans apical junctions involves compaction by LET-413 and protein aggregation by the MAGUK protein DLG-1. J Cell Sci, 114 2265-77.

- Michaux, G., Legouis, R. and Labouesse, M. (2001) Epithelial biology: lessons from Caenorhabditis elegans. Gene, 277 (1-2) 83-100.

- Niculita, H., Julien, J.-F. and Petrochilo, E. (2001) A molecular study of Abdominal-A in the ant Myrmica rubra reveals lineage dependant evolutionary rates for a developmental gene. Insect Molecular Biology, 10 513-521.

- Niculita, H. and Petrochilo, E. (2001) Caractérisation moléculaire de l'homologue abdominal-A chez les fourmis. Mésogée, 59 41-45.

- Pinta, V. (2001) Le groupe des "gènes photosynthétiques" de la bactérie pourpre Rubrivivax gelatinosus: caractérisation de gènes de biosynthèse de pigments et organisation transcriptionnelle de deux super-opérons. Thèse, Paris XI.

- Pompon, D. and Masson, J. (2001) Générer la biodiversité. Biofutur, 214 40-45.

- Puig, O., Caspary, F., Rigaut, G., Rutz, B., Bouveret, E., Bragado-Nilsson, E., Wilm, M. and Seraphin, B. (2001) The tandem affinity purification (tap) method: a general procedure of protein complex purification. Methods, 24 (3) 218-229.

- Radomski, J. P. and Slonimski, P. P. (2001) Genomic style of orthologous proteins: concepts, methods and analyses of ribosomal proteins from 16 microbial species. FEMS Microbiol Rev, 25 425-435.

- Ranck, J. L., Ruiz, T., Pehau-Arnaudet, G., Arnoux, B. and Reiss-Husson, F. (2001) Two-dimensional structure of the native light-harvesting complex LH2 from Rubrivivax gelatinosus and of a truncated form. Biochim Biophys Acta, 1506 (1) 67-68.

- Ravanel, S., Cherest, H., Jabrin, S., Grunwald, D., Surdin-Kerjan, Y., Douce, R. and Rebeille, F. (2001) Tetrahydrofolate biosynthesis in plants: molecular and functional characterization of dihydrofolate synthetase and three isoforms of folylpolyglutamate synthetase in Arabidopsis thaliana. Proc Natl Acad Sci USA, 98 (26) 15360-5.

- Rossignol, M., Basset, A., Espéli, O. and Boccard, F. (2001) NKBOR, a mini Tn10-based transposon for random insertion in the chromosome of Gram-negative bacteria and the rapid recovery of sequences flanking the insertion sites in E. coli. Res Microbiol, 152 481-485.

- Royou, A. (2001) Rôle de la myosine II non musculaire dans la cytocinèse et l'embryogenèse précoce chez la drosophile. Thèse, Université Paris XI.

- Ruhf, M. L., Braun, A., Papoulas, O., Tamkun, J., Randsholt, N. B. and Meister, M. (2001) The domino gene of Drosophila encodes novel members of the SWI2/SNF2 family of DNA-dependent ATPases, which contribute to the silencing of homeotic genes. Development, 128 (8) 1429-41.

- Saint-Georges, Y., Hamel, P., Lemaire, C. and Dujardin, G. (2001) Role of positively charged transmembrane segments in the insertion and assembly of mitochondrial inner-membrane proteins. Proc Natl Acad Sci USA, 98 13814-13819.

- Scaerou, F., Starr, D., Piano, F., Papoulas, O., Karess, R. and Goldberg, M. (2001) The Zw10 and rough deal checkpoint proteins function together in a large, evolutionarily conserved complex targeted to the kinetochore. J Cell Sci, 114 (Pt 17) 3103-3114.

- Scheuring, S., Reiss-Husson, F., Engel, A., Rigaud, J. and Ranck, J. (2001) High resolution AFM topographs of Rubrivivax gelatinosus light-harvesting complex LH2. EMBO J, 20 3029-3035.

- Seraphin, G., Puig, O., Bouveret, E., Rutz, B. and Caspary, F. (2001) Tandem affinity purification (TAP) to enhance mass spectrometry. Cold Spring Harbor Laboratory Manual : Protein Interactions. Chapter 25. Golermis, E. and Becskei, A., Séraphin, B., Serrano, L. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J, 20 2528-2535.

- Sureau, A., Gattoni, Y., Dooghen, J., Stévenin, J. and Soret, J. (2001) SC35 autoregulates its experession by promoting splicing events that destabilize its mRNAs. EMBO J, 20 1785-1796.

- Thual, C., Bousset, L., Komar, A. A., Walter, S., Buchner, J., Cullin, C. and Melki, R. (2001) Stability, folding, dimerization and assembly properties of the yeast prion Ure2p. Biochemistry, 40 1764-1773.

- Toro, I., Thore, S., Mayer, C., Basquin, J., Seraphin, B. and Suc, D. (2001) RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex. EMBO J, 20 (10) 2293-303.

- Tsapis, N., Reiss-Husson, F., Ober, R., Genest, M., Hodeges, R. and Urbach, W. (2001) Self-diffusion and spectral modifications of a membrane protein, the Rubrivivax gelatinosus LH2 complex, incorporated into a monoolein cubic phase. Biophys J, 81 1613-1623.

- Urban, P., Jobert, A.-S., Lainé, R. and Pompon, D. (2001) Cytochrome P450(CYP) mutants and substrate-specificity alterations: segment-directed mutagenesis applied to human CYP1A1. Biochemicla Society Transactions, 29 (part 2) 128-135.

- Uzzau, S., Figueroa-Bossi, N., Rubino, S. and Bossi, L. (2001) Epitope tagging of chromosomal enes in Salmonella. Proc Natl Acad Sci USA, 98 15264-15269.

- Vervoort, M. and Ledent, V. (2001) The evolution of neural basic Helix-Loop-Helix proteins. Scientific World J, >1 396-426

- Vidal, S., Khush, R. S., Leulier, F., Phoebe, T., Nakamura, M. and Lemaitre, B. (2001) Mutations in the Drosophila dTAK1 gene reveal a conserved function for MAPKKKs in the control of rel/NF-kB dependent innate immune responses. Genes Dev, 15 (16) 1900-12.

- Vo, L. T. A., Minet, M., Schmitter, J. M., Lacroute, F. and Wyers, F. (2001) Mpe1, a zinc knuckle protein, is an essential component of yeast cleavage and polyadenylation factor required for the cleavage and polyadenylation of mRNA. Mol Cell Biol, 21 8346-56.

- Volkoff, A., Rocher, J., Cérutti, P., Ohresser, M., d'Aubenton-Carafa, Y., Devauchelle, G. and Duonor-Cérutti, M. (2001) Persistent expression of a newly characterized hyposoter didymator polydnavirusgene in long-term infected lepidopteran cell lines. J Gen Virol, 82 963-969.

- Vosanek, E., Mateu, L., Luzzati, V., Vargas, R., Marquez, G., Bordo, M., G., R., Cespades, M., Cotua, M. and Borges, J. (2001) The abnormal structure of the lyelin sheaths in the sural nerve from a patient with gangrenous lesions in feet and legs:an X-ray scattering study. Europ J Biophys, 30 (1) 11-3.

- Walke, S., Bragado-Nilsson, E., Seraphin, B. and Nagai, K. (2001) Stoichiometry of the Sm proteins in yeast spliceosomal snRNPs supports the heptamer ring model of the core domain. J Mol Biol, 308 (1) 49-58.

- Winter, C., Wang, B., Ballew, A., Royou, A., Karess, R., Axelrod, J. and Luo, L. (2001) Drosophila Rho-associated kinase (Drok) links Frizzled-mediated planar cell polarity signaling to the actin cytoskeleton. Cell, 105 (1) 81-91.

- Wojcik, E., Basto, R., Serr, M., Scaerou, F., Karess, R. and Hays, T. (2001) Kinetochore dynein: its dynamics and role in the transport of the Rough deal checkpoint protein. Nat Cell Biol, 3 (11) 1001-7.

 

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